Creation-Evolution Headlines
August 2007
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“The problem with science is not that the naturalistic approach might occasionally be inadequate.  The problem is that science would never know any better.  This is science’s blind spot.  When problems are encountered, theological naturalism assumes that the correct naturalistic solution has not been found.  Non-natural phenomena will be interpreted as natural, regardless of how implausible the story becomes.”
—Cornelius Hunter, Science’s Blind Spot: The Unseen Religion of Scientific Naturalism (Brazos Press, 2007; see review by Guillermo Dekat).
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Solar System Solved?   08/30/2007    
Those who deal in models of the origin of the solar system sometimes have to entertain themselves to overcome grief.  See if you can detect this attitude in the following Stupid Evolution Quote of the Week from Space.com:

“This has been a stumbling block for 30 years,” said Mordecai-Marc Mac Low, an astrophysicist at the American Museum of Natural History in New York City, of planet formation theories.  “The reason is that boulders tend to fall into the star in a celestial blink of an eye.  Some mechanism had to be found to prevent them from being dragged into a star.”
    The solution: Together, many boulders can join to fight a cosmic headwind that otherwise would doom them.
Surely writer Dave Mosher did not mean to imply literally that boulders were conspiring to defend themselves from doom.  But the problem is evident: without some sort of ad hoc speculation to insert into the models, astronomers know that small pieces of dust and rock don’t naturally form planets.  They fall into the star in a very short time.  Alan Boss, another modeler, agreed with this characterization: “Overall, the calculations present an encouraging approach to understanding how something happened that we know must have happened, at least for the terrestrial planets.”  (The article continued by saying that the gas giants need another mechanism to form.)
    For small dust grains and rocks in orbit, the game is over in just a few hundred times around the merry-go-round with the vacuum cleaner in the center making a large sucking sound.  Mac Low said his explanation was like a group of semi trucks on a highway creating “a friendly pocket of air behind it that other semis can travel in without using up as much fuel.”  Still, he has to have the small rocks combine into planetesimals large enough to attract more material by gravity.  The new model is far from a complete theory.  At this point, it is a little more than a chuckle during the usual grief session.
This is a real-life demonstration of the Harris cartoon that shows a scientist doing a derivation with complex equations on the blackboard, with one intriguing step inserted, “Then a miracle occurs.”  Titling this story “Planet Formation Mystery Solved” yields an even bigger chuckle.
Next headline on:  Solar SystemDumb Ideas
Is the Universe Hole-y?   08/29/2007    
Cosmologists are trying to avoid a void.  Since astronomers at U of Minnesota announced a gaping hole in a distant part of the universe, representing a region of space devoid of matter a billion light-years across, others are scrambling to discern what it means.  The issue was discussed on EurekAlert, BBC News, Science Now, and Space.com.  It even made the nightly TV news.
    The Minnesota team compared observations from the Very Large Array of radio telescopes with WMAP data, and looked closer at a region showing a remarkable drop in the number of galaxies in a region toward the constellation Eridanus.  Other voids have been detected in the past, but never one this large.  “Astronomers don’t know why the hole is there,” said science writer Robert Roy Britt.  Others don’t know that it’s there.
Cosmological observations are so deeply intertwined with theory, it is often hard to tell the one from the other.  The hole could be real, or it could be an artifact of the theory and techniques used.  Some cosmologists (see the BBC article) are claiming this a confirmation of dark energy.  ScienceNow said it contradicts the inflation theory.  And it quoted one astronomer who thought the conclusion was premature.  The Minnesota team said their announcement will need independent confirmation, so it is unwise to lean too heavily on the reports.  Still, it’s fun to see scientists get surprised once in awhile.
Next headline on:  Cosmology
  Your hairy ears provide optimum sensitivity, from 08/09/2004.

Solar System News   08/28/2007    
A flurry of discoveries about the Sun’s family has some scientists smiling and others furrowing their brows.  Astrobiologists, as usual, are wielding their divining rods, looking for water.  Some of these reports surfaced at the European Planetary Science Congress last week at Potsdam, Germany; see agenda and press releases at Europlanet.

  1. Basalt assault:  How did small objects in the solar system get hot enough to melt?  The European Space Agency is baffled to find evidence of basalt on asteroids between Mars and Jupiter, reported Science Daily.  Dr. Rene Duffard said, “We do not know whether we have discovered two basaltic asteroids with a very particular and previously unseen mineralogical composition or two objects of non basaltic nature that have to be included in a totally new taxonomic class.”  See also the Space.com report.
        The Dawn Spacecraft, scheduled to launch Sept. 26, may be able to find out more about the asteroid belt when it orbits Vesta in 2011 and Ceres in 2015.  Basalt has been observed on Vesta, an asteroid considered large enough to sustain internal heating.  Before now, basalt-containing asteroids were thought to be fragments from Vesta.
  2. Comet panspermia:  Chandra Wickramasinghe (Cardiff U) is still pushing panspermia, claiming comets are cosmic storks that seeded the Earth with life.  PhysOrg discussed his investigation of comet interiors based on the Deep Impact and Stardust missions, and quoted his conclusion: “The findings of the comet missions, which surprised many, strengthen the argument for panspermia.  We now have a mechanism for how it could have happened.  All the necessary elements – clay, organic molecules and water – are there.  The longer time scale and the greater mass of comets make it overwhelmingly more likely that life began in space than on earth.”
  3. Jupiter: Earth’s protector?  A report on News@Nature questions whether Jupiter is Earth’s bouncer, shielding our planet from impacting comets.  This was a claim in Ward and Brownlee’s book Rare Earth and was also listed in Richards and Gonzalez’ book The Privileged Planet as an indicator of Earth’s good fortune.  Now, the case does not seem as clear cut.  National Geographic also reported on the study presented at the European Planetary Science Congress last week.  Astronomers Jonathan Horner and Barrie Jones concluded that Earth is no better or worse off with Jupiter present.  Their model found, strangely, that the highest risk to Earth would have come if Jupiter were about the mass of Saturn.  Many factors affect the risk analysis, so some disagreement remains.  Science Now mentioned that asteroids and different classes of comets respond differently to the gravitational pull of Jupiter.
  4. Comet bomb:  Speaking of comets affecting Earth, PhysOrg presented a story from scientists at UC Santa Barbara that “a large comet may have exploded over North America 12,900 years ago, explaining riddles that scientists have wrestled with for decades, including an abrupt cooling of much of the planet and the extinction of large mammals.”  They based this on iridium levels and microspherules with traces of gas said to be of extraterrestrial origin.  The cometary explosion would have affected ocean currents, ice sheets, and global climate, they claimed.
  5. Enceladus no aquarium:  Don’t count on finding life at Enceladus, the erupting moon of Saturn, reported a press release from the University of Illinois.  A new model by Susan Kieffer invokes non-watery processes that don’t require a hot interior.  Her model is being added to the mix of possible explanations for this small moon’s activity.
  6. Sharp moon:  The European Space Agency is using images from the SMART-1 spacecraft to try to piece together a story of our moon’s volcanic history.  They claim that “Different ‘pulses’ of volcanic activity in lunar history created units of lava on the surface,” yet did not mention a mechanism that would re-awaken the moon periodically between long periods of silence.
        The BBC News reported that Arizona State University is scanning Apollo moon photos at high resolution and releasing them on a new Apollo moon archive website.  These ultra-sharp orbital photos, taken from Apollo 15, 16, and 17, have been “locked away in freezers by Nasa [sic] to preserve them.”  Digital scanning at high resolution and contrast depth will allow these rarely-seen images to be widely viewed for the first time since the 1970s.
  7. Uranus ring circus:  Now that the rings of Uranus can be seen edge-on for the first time in 42 years, scientists are taking advantage of the rare alignment to study them, reported EurekAlert, the European Southern Observatory and the BBC News.  A group at UC Berkeley was surprised that “their images show that the rings are changing much more quickly than researchers had previously believed.”  In particular, the inner rings are more prominent now than they were when Voyager 2 flew by in 1987.  A press release from UC Berkeley mentions that similar, dramatic changes have been detected in the rings of Neptune and Saturn, because a lot of forces act on the small dust grains in the rings.  “These forces include pressure from sunlight, drag produced as the dust plows through ionized plasma around Uranus, and even drag from the planet’s magnetic field.”  Impacts from larger bodies can also affect the rings.
  8. Martian life redox:  A German astrobiologist is claiming that life could still exist on Mars, provided it uses hydrogen peroxide and water.  Science Now reported how Dr Joop Houtkooper of the University of Giessen, Germany, looked at the Viking soil test results and speculated that “hydrogen peroxide may have been more suitable for organisms adapting to the cold, dry environment of Mars.”  A 1979 Viking image adorned Astronomy Picture of the Day along with Houtkooper’s “speculative question.”  While admitting “such speculation is not definitive,” it justified the story thus: “debating possibilities for life on Mars has again proven to be fun and a magnet for media attention.”  But Ker Than reported for Space.com that other scientists consider Houtkooper’s claim “bogus.”  Norman Pace (U of Colorado) said, “I don’t consider the chemical results to be particularly credible in light of the harsh conditions that Mars offers.”  He also noted that hydrogen peroxide is deadly to terrestrial cells except when cells produce it locally to combat bacteria.
  9. Titan your seat belts:  When the Huygens probe descended through Titan’s atmosphere in January 2005, it had a bumpy ride.  EurekAlert reported that Cassini scientists working with weather balloon specialists are getting a handle on understanding how turbulence affected the probe’s descent.  The feedback from Titan may actually help improve weather balloon sensor design.  “We went to Titan to learn about that mysterious body and its atmosphere,” said Ralph Lorenz (Johns Hopkins U); “it’s neat that there are lessons from Titan that can be usefully applied here on Earth.”  The Cassini site also echoed the story that originated from the European Space Agency.
        Another story on Titan from the European Planetary Science Congress concerned the erosion of Titan’s methane (see Europlanet press release).  Vasili Dimitrov said “The conditions of Titan’s accretion and evolution are poorly understood,” admitting that the long-term storage of methane on the giant moon is a problem.  “Methane drives the chemical reactions in Titan’s atmosphere but, because it’s so highly reactive and therefore short-lived, it must be replenished,” he said.  He suggested that it might be stored in water-ice clathrates, like crystal cages, but the best packing ratio would require temperatures close to absolute zero.  How and where Titan’s methane reservoir was stored is an unsolved problem.
  10. All you wanted to know about Hyperion:  The Cassini mission released a PDF presentation about Hyperion by James Bauer (JPL) and Peter Thomas (Cornell), describing all that is known from Voyager and Cassini about the “sponge moon” and its anomalous carbon dioxide deposits on surface.  Notable facts include the low density (40%), the dark deposits on crater floors, and the apparent match between the dark material on Hyperion and on Iapetus.  Speaking of Iapetus, Cassini is aimed at a super-close flyby of the black-and-white moon on September 10.  On the way it will make fairly close passes by Rhea and Titan on August 30 and 31.  Cassini’s last good look at Iapetus was from more than 76,000 miles away in 2005.  In less than two weeks, the spacecraft flies within 1,000 miles of one of the most intriguing moons of the solar system.
  11. Saturn mysteries:  Charles Q. Choi wrote for Space.com that the mysteries at Saturn are mounting.  He catalogued some of the mysteries that Cassini has revealed and so far been unable to answer, including the north polar hexagon, the purity of Saturn’s ring material, the well-defined structures within the rings, the spin rate of the planet and the tugging effect by the little moon Enceladus, and the “energy crisis” of unexplained heat in Saturn’s atmosphere.  Dave Mosher wrote last week in Space.com about another Saturnian mystery that scientists cannot explain: the electrically-charged torus around Saturn is “a lopsided mess.”  For those wanting to just enjoy the pictures, Space.com posted a “Best Cassini Image” gallery for visitors to vote on.
  12. Something nu under the sun:  “After 4.5 billion years, sunshine finally figured out,” said Andrea Thompson in her headline for Space.com.  That’s odd, since recorded human history only extends back about one millionth of that time.  Anyway, Princeton researchers using an Italian neutrino detector have detected the low-energy neutrinos expected from current models of solar fusion reactions.  Neutrinos are notated by the Greek letter nu.
        Solar energy was blamed for stripping Mars of its water, according to Space.com.  Scientists reporting at the European Planetary Science Congress said that “The water might have been blown into space long ago by strong gusts of solar winds, new satellite observations suggest.”  Effects of solar flares were studied by four spacecraft simultaneously: NASA’s Mars Express, Venus Express and Earth-orbiting GEOS satellite, and the European Space Agency’s SOHO solar orbiter.  High-energy particles were detected at Venus, Earth and Mars simultaneously.  The Earth’s atmosphere is protected by its global magnetic field; Mars is not so blessed.
Want to see the stars from Earth any time?  Go to the new Google Sky addition to the popular Google Earth, reported Space.com.  It shows Hubble Telescope images against starry backgrounds and gives you a virtual tour of outer space.
These are great days for discovery about our solar neighborhood.  So much is happening in planetary science, it’s hard to take it all in.  Be sure to separate the observations from the speculations.  Sometimes that’s like trying to unbutter toast.
Next headline on:  Solar SystemOrigin of LifeGeologyPhysics
Tales of Two Footprints   08/27/2007    
Footprints in the sands of time have been found at two different locations.  What tales do they tell?
    One is a footprint of a Roman soldier.  EurekAlert described how the sandal print was uncovered at Hippos, or Susita, on a hill east of the Sea of Galilee.  It hints that soldiers participated in building the walls of the city.  The Israel newspaper Haaretz contained some more details about the find, and Todd Bolen commented on its limited tie-in to Biblical history on his Bible Places Blog.
    Another print is claimed to be far older.  The BBC News reported what may be the “oldest human footprint ever found.”  The article did not describe the print, but called it “human” instead of ape-like.  The problem is that it is claimed to be two million years old, or more – as much as 3 million, maybe even older than Lucy.  The secretary general of the Egyptian Supreme Council of Antiquities, Zahi Hawass, is calling it possibly “the most important discovery in Egypt.”  Others are not so sure what to think of it.
You, too, could leave tracks that will allow future scientists to speculate.  For fun, leave a note with your next footprint saying, “Today’s date is August 28, 1,598,251 BC.”
Next headline on:  Early ManFossils
Evolution Takes Credit   08/24/2007    
It may be more blessed to give than to receive, but evolution often just takes.  The following news stories show evolution taking credit for a variety of phenomena when it is not quite clear how it earned it.
  1. Big insects:  Scientists at Argonne National Laboratory surmised that insects were larger in the past because there was more oxygen in the air.  “In the late Paleozoic Era, with atmospheric oxygen levels reaching record highs, some insects evolved into giants,” the press release claimed.  “When oxygen levels returned to lower levels, the insect giants went extinct.”  The article did not explain how oxygen could cause mutations that would make insects bigger.  It also did not explain how other systems in the insects would evolve to compensate for the gigantism.  It just said that they did: “This would allow larger-sized insects—even giants—to evolve.”  These questions are in addition to the conundrum of why it would be considered evolution for insects to be larger and more numerous in the past than they are today.  Speculating about how 35% oxygen levels might have exacerbated forest fires is left as an exercise.  See also Science Daily.
  2. Radio bats:  The horseshoe bats of Sardinia tune into their own frequency, reported EurekAlert.  This allows each species to communicate on its own “private bandwidth” in order to “avoid all confusion” between mainland bats and island residents.  Although gene flow between related populations is well documented, the article did not explain how the sophisticated sonar of these bats arose by evolution nor how it diversified.  Nevertheless, evolution took the credit: “Once again, islands turned out to be excellent natural laboratories to explore evolutionary patterns and processes.
  3. Evolution helps you stay unevolved:  Evolution seems synonymous with change, but some species manage to stay the same even in changing environments.  One would think this property, called canalization, to be the antithesis of evolution, but an article on EurekAlert about plants found evolution in the lack of change.  “‘Don’t ever change’ isn’t just a romantic platitude.  It’s a solid evolutionary strategy,” the article quizzically began.  Even though canalization “keeps you in the zone” away from evolutionary change, “in many cases it’s better to just shake off the minor fluctuations in the environment because in evolution, there are optimal traits to have, a place you want to be.”  Evolution, therefore, explains non-evolution.
  4. Symbiosis kumbaya:  A moth and a cactus live in such tight company, neither can survive without the other.  An article about this phenomenon, called mutualistic symbiosis, appeared in EurekAlert.  The work of Nat Holland (Rice University) was highlighted.  Though the short article did not mention evolution specifically, it can be safely assumed that Holland, an “assistant professor of ecology and evolutionary biology,” was not out to discover any non-evolutionary explanations for this remarkable relationship.
  5. Panda thumbs an evolutionary ride:  Those lovable giant pandas are not an “evolutionary dead end,” declared an article on EurekAlert.  A Chinese team “has found that the decline of the species can be linked directly to human activities rather than a genetic inability to adapt and evolve.”  No mention was made of how giant pandas evolved in the first place, nor how they turned out to be successful in their natural niches, but that was not a liability for Darwin.  It only meant that “Our research suggests we have to revise our thinking about the evolutionary prospects for the giant panda.”
  6. Snakes as evolutionarily success stories:  “Snakes are very evolutionarily successful,” said a researcher reported by PhysOrg who found a novel strategy snakes employ to avoid starvation: lowering their basal metabolic rates.  How snakes achieved this remarkable survival skill was left unstated, but evolution took credit once again: “Understanding the physiology that allows them to succeed in low-energy environments will help scientists further their understanding of the snakes’ evolution and their adaptation to their current ecosystems.”
This last quote illustrates how science reporters often confuse adaptation with evolution.  Everyone, creationist or evolutionist, observes the remarkable fit of animals and plants to their environment—adaptation.  Assuming that blind, purposeless processes of evolution produced these adaptations seems to be, for these reporters, intuitively obvious.
We need to understand how the Darwin Party achieves its consensus that evolution is a fact.  They do it by assuming it.  Like the campers in the woods trying to figure out how to open their tuna can, they simply state, “assume a can opener.”  Assumption performs the miracles without all the hard work.  Say this often enough, and every camper can get on handsomely by assuming can openers and whatever other tools real campers used to have to pack.
    “Evolution takes credit,” this entry began.  That’s true in another sense, too.  Evolutionists charge their explanations on Darwin Party credit cards.  These attractive cards have the advantage of never requiring payback.  Why?  Look what happens when whistleblowers try holding the carriers accountable (03/25/2007).  As with citizens in a town controlled by the mob, it’s much safer to just let them run up a bill and pay it out of the public trust.
Next headline on:  EvolutionMammalsZoology
Fossil Gorilla Forces Hominid Ancestor Earlier   08/23/2007    
A set of gorilla teeth found in Ethiopia pushes the evolutionary story of a split between apes and humans back almost twice as far as previously thought.  Nature reported the fossil announcement that estimated the date of the teeth as 10.5-11 million years old.1  The prior estimate for a human-ape divergence was about 6 million.
    The authors named the fossil a new species, but Rex Dalton in the same issue of Nature2 reported the team lead saying that the teeth “are collectively indistinguishable from modern gorilla subspecies” in form, size, internal structure and proportion.
    Both papers alluded to an extreme paucity of fossils from the period of 7 to 12 million years on the evolutionary time scale.  Dalton claimed this fossil “helps to fill in a huge gap in the fossil record.”  Yet the original paper admitted that “Phylogenetically, these fossils represent the first Miocene ape species to be recognized as a strong candidate for membership in the modern gorilla clade,” because the teeth are indistinguishable from those of modern gorillas except that they show a large size variation.
    National Geographic put a good-news-bad-news spin on the story.  The good news, to them, was that the discovery “fills an important gap in the fossil record” but at the same time, unfortunately for paleoanthropologists, it “could also demolish a working theory of human evolution.”  Why?  It means that “everything has to be put back” farther in time than expected.  This gorilla was essentially modern at least 2 million years earlier than the alleged common ancestor was thought to exist.  The common ancestor, therefore (for which there is no fossil evidence), had to live even earlier by millions of years.
1Suwa et al, “A new species of great ape from the late Miocene epoch in Ethiopia,” Nature 448, 921-924 (23 August 2007) | doi:10.1038/nature06113.
2Rex Dalton, “Oldest gorilla ages our joint ancestor,” Nature 448, 844-845 (23 August 2007) | doi:10.1038/448844a.
If you take out the evolutionary dates and assumptions, the facts show this: modern-looking gorilla teeth of unknown age were found fossilized in water-laid sediments in Ethiopia.  Where is the evolution?  There is none.  The ancestry/phylogeny talk is all inference based on the usual dogmatic evolutionary rules that require every fossil bone to decorate Charlie’s tree somehow, even if the fit is poor.
    They now have to believe that gorilla evolution was even more rapid from the time of some mythical common ancestor that must also have evolved rapidly from earlier primates.  They even tried to wave the magic wand of “convergent evolution” to explain some of the modern features.  Their whole story just got even more convoluted and implausible than it already was.  The story was already more gap than bone.  Some nice transitional form would have been welcome – but not modern-looking gorilla teeth farther back than they were supposed to exist.
    Nothing in the observable evidence suggests millions of years, nor any evolution or any ancestry between chimps, gorillas and humans.  Don’t fall for the evolutionists’ talking points.  Instead, follow their eyes.  The surprised looks are more revealing than their claims.
Next headline on:  Early ManFossilsMammals
Hollywood Film to Expose Darwin Dogma   08/22/2007    
Darwin is going to get a surprise on his birthday next year.  Ben Stein is releasing a film on Feb. 12, 2008, entitled “Expelled: No Intelligence Allowed.”  The gift may not be what Darwin wants.  The press release subtitle asks, “Whatever happened to free speech?”  Apparently Premise Media decided to document the trend among Darwinists to crush any dissent:
What freedom-loving student wouldn’t be outraged to discover that his high school science teacher is teaching a theory as indisputable fact, and that university professors unmercifully crush any fellow scientists who dare question the prevailing system of belief?  This isn’t the latest Hollywood comedy; it’s a disturbing new documentary that will shock anyone who thinks all scientists are free to follow the evidence wherever it may lead....
    Ben Stein, the lovable, monotone teacher from Ferris Bueller’s Day Off and The Wonder Years is on a journey to answer one of the biggest questions ever asked: Were we designed or are we simply the end result of an ancient mud puddle struck by lightning?  Stein, who is also a lawyer, an economist, a former presidential speechwriter, author and social commentator, is stunned by what he finds on his journey.  He discovers an elitist scientific establishment that has traded in its skepticism for dogma.  But even worse, along the way, Stein uncovers a long line of biologists, astronomers, chemists and philosophers who have had their reputations destroyed and their careers ruined by a scientific establishment that allows absolutely no dissent from Charles Darwin’s theory of random mutation and natural selection.
The Discovery Institute, one of the frequent targets of the Big Science “Darwinian machine,” is looking forward to this documentary with cautious optimism.  The movie trailer can be found at ExpelledTheMovie.com.  It shows Ben in shorts and a tie blowing the bullhorn on suppression.  The site contains a blog, newsroom and other resources for involvement.
Well, this is an interesting development.  Will the Darwin attack machine try to take on Ben Stein, or just ignore him?  Do we finally have a courageous reporter unafraid to ask the hard questions and stand up to institutionalized suppression?  What will the NCSE do to forestall a media crisis, right when they are trying to make Darwin Day an international event?  They certainly have ample warning, so this will be a battle royale worth watching.  We just hope that the comedy-documentary format will not detract from the scientific and philosophical flaws of Darwinism.  These need airing in serious circles among trained minds.  Still, sometimes a media focus can help shake a stalled discussion loose.  Stein’s appeal to the rebel instinct may attract some youthful bystanders to ask questions.
    Most likely the Darwin Party will try to portray Ben Stein as a clown who doesn’t know what he is talking about, and treat the film like a small roadside protest that can be safely ignored as Big Science marches on in the Darwin parade.  We know their tactics: whitewash the cases of suppression in the film as small-time aberrations, lie about all the overwhelming evidence for evolution, pick on small flaws in the film but ignore the main points, and marginalize Stein and film fans as religious nuts.  It appears that Stein and the producers will not take being pigeonholed so easily.  They intend this to start a nationwide debate.  We’ll see.  The Darwin Party has amassed a huge arsenal to protect its idol.  The thing about idols, though, is: the bigger they are, the harder they fall.  Pieces of the Darwin idol may one day become trophies as coveted as pieces of the Berlin Wall.
Next headline on:  DarwinIntelligent DesignEducationMedia
Editorial 08/21/2007:  A stinging indictment of Darwinist tyranny by David Warren appeared in the Ottawa Citizen on Aug 19.

Crows Use Tools on Tools   08/21/2007    
Crows can use one tool on another to get food.  A report in Science Daily says they appear to use analogical reasoning, not just trial and error, to figure out how to manipulate objects.  They used a short stick to get a longer stick out of a toolbox in order to reach a snack too far for the short tool.  In this, “The birds’ tool-use skills rival those seen among great apes, according to the researchers” at University of Auckland.
    Analogical reasoning was thought to be at the core of human innovation.  One said, “It was surprising to find that these ‘bird-brained’ creatures performed at the same levels as the best performances by great apes on such a difficult problem.”

Let’s be good empirical Darwinists and take the evidence where it leads.  Chimps evolved into birds, which evolved into humans.  Mustn’t let species bias cloud our reasoning, now.  Darwinists have made a big deal over intelligence as evidence of our evolutionary kinship to apes.  Now, having to eat crow at this finding, they must be feeling in the mood for some Old Crow at the Crow Bar.
Next headline on:  BirdsAmazing Facts
Two Ways to Look at a Fin   08/21/2007    
Two science articles this month showed very different ways to look at a fish fin.  One looked for evolution; the other looked for design.  One tried to trace an evolutionary story with no practical application; the other tried to find ways to improve our lives.
    The evolutionary story involved a fossil coelacanth.  Science Daily reported that a fossil coelacanth fin found by researchers from University of Chicago “fills a shrinking evolutionary gap between fins and limbs.”  Yet it was unclear how it did so, since the article went on to say that both the fins of coelacanths and lungfish, once thought to be ancestral to tetrapods, are in fact actually specialized.  Matt Friedman, the team leader, denied even that coelacanth was a living fossil.  It was also unclear how this fossil helped the evolutionary story.  “With things like this [fossil],” he said, “we’re beginning to hone in on the primitive conditions of fins that gave rise to limbs later on.”  This indicates that they do not have evidence of primitive fins – only of advanced fins that could not have been part of an assumed evolutionary sequence leading to limbs.
    The other story, a press release from Massachusetts Institute of Technology, described how a team is trying to imitate the swimming action of fish fins.  “Inspired by the efficient swimming motion of the bluegill sunfish, MIT researchers are building a mechanical fin that could one day propel robotic submarines.”  The sunfish can hover, turn, and store energy.  This particular species is able to propel itself forward with no backward drag.  As part of their research, the team “broke down the fin movement of the sunfish into 19 components and analyzed which ones are critical to achieving the fish’s powerful forward thrust.”  Then they built an artificial fin using advanced polymers to mimic the motion.  Some day, autonomous underwater vehicles (AUVs) may use these principles to achieve greater maneuverability at less energy cost.  This effort “gives us the potential to build machines or robots in a manner closer to how nature creates things,” said one, and “will help engineers figure out how to best adapt nature’s principles to designing robotic vehicles.”
Compare the benefit of biomimetic research with the utter uselessness of Darwinian speculation.  The nonsense going on at U of Chicago, the Center of Tetrapod Evolution Fability (01/16/2007 commentary), is wasting our time.  They cannot connect the fossil dots in any believable sequence between fish and amphibians, but have the gall to lie to us: first, about the “shrinking evolutionary gap between fins and limbs,” and secondly by denying coelacanth is a living fossil.  Do they even know what a living fossil is?  Here was a creature known only from the fossil record, thought to be extinct from the age of dinosaurs, that was found alive and well in 1938.  It doesn’t matter whether it is considered a transitional form now, because it was thought to be so by all evolutionists then.  When they found that it does not use its fins for supporting its body on land, they had to quickly change their fable in light of the facts in front of them.  They’ve learned nothing in the intervening 70 years and have done no one any good.  Evolution is useless, vapid, evanescent speculation about things they cannot know and cannot prove, holding us hostage to promissory notes about insight that turns out to be positively anti-knowledge (see Luther Sunderland comments).
    The other story, by contrast, has real value.  The researchers saw an efficient design in nature.  They were inspired to create a similar mechanism that could improve our lives.  Which kind of science do you prefer gets the government funding?  If the rascally Darwinist usurpers ever get ejected from the lab for the crime of impersonating a scientist, civilization won’t miss them.  Real scientists will suddenly see a surge in funding and resources that had been wasted on fruitless storytelling.  Help mankind: fire a Darwinist.
Next headline on:  FossilsDarwinian EvolutionMarine BiologyBiomimeticsPhysics
Stupid Evolution Quote of the Week:  Let Darwin Take Over   08/20/2007    
Jack Szostak (Harvard Medical Center) wins this week’s prize for a comment in an Associated Press article (see PhysOrg) claiming that scientists will create life in a test tube within 10 years.  Szostak was explaining the process of creating a cell membrane to the reporter:
His idea is that once the container is made, if scientists add nucleotides in the right proportions, then Darwinian evolution could simply take over.
    “We aren’t smart enough to design things, we just let evolution do the hard work and then we figure out what happened,” Szostak said.
Several international organizations, such as ProtoLife in Venice, are in the competition to “create life from scratch,” the article claims.  Creating synthetic life will need to overcome three hurdles: the membrane, the genetic code, and the metabolism.  It’s the membrane that Szostak had said was “not a big problem.”
    Mark Bedau of ProtoLife tried to assure the reporter that artificial life will not get out and run amok.  He claims artificial cells will be too weak to pose a risk: “But them getting out and taking over, never in our imagination could this happen.”
One of our readers thought that Szostak’s entry deserved to be called “Stupid Evolution Quote of the Century.”  But then, there are already too many entries in that category.  Tryouts are opening for the millennium class.
    Reality check: they are not creating life from scratch; they are copying existing technology.  To really make life from scratch, they would have to start by inventing the universe.  Copying the packaging, coding, and metabolism of existing life is a huge, huge head start.  These guys think they are dumber than Darwinism, and they are right.  Are they the ones you would trust to tell us that synthetic biology will be safe?
Next headline on:  DarwinismCell BiologyOrigin of LifeDumb Ideas
  Can atheism survive an anthropic universe?  from 08/16/2005.

Mystery of the Ultraconserved Elements, Cont.   08/18/2007    
In 2004, Gill Bejerano et al reported ultraconserved elements in the human genome (05/27/2004).  These were non-coding regions that, for some unknown reason, showed no evolution between mouse and human – a time span over tens of millions of years.  Since many of these ultraconserved regions are also found in bird genomes, they added that some genetic regions have maintained 100% sequence similarity for 300 million years.
    Now, Bejerano and others have reported in Science that these ultraconserved elements are also ultraselected.1  It appears that strong purifying selection acts three times stronger on these regions than on genes.  The reason for the ultraconserved regions “remains a mystery,” they said.  They could offer no explanation for why natural selection would prevent changes to these sections that are 200 base pairs long and longer.  Whatever they are there for, “These data argue that ultraconserved elements are currently, as well as historically, strongly constrained functional elements.”
Update 09/06/2007: A press release from Berkeley Lab talked about this, calling it a “major challenge to our understanding of how highly conserved elements of the genome persist.”  Mice with one of the ultraconserved elements knocked out appeared to do just fine.  Their paper appeared in the September 2007 issue of PLoS Biology.2


1Katzman, Kern, Bejerano et al, “Human Genome Ultraconserved Elements Are Ultraselected,” Science, 17 August 2007: Vol. 317. no. 5840, p. 915, DOI: 10.1126/science.1142430.
2Ahituv et al, “Deletion of Ultraconserved Elements Yields Viable Mice,” Public Library of Science: Biology 5(9): e234 doi:10.1371/journal.pbio.0050234.
Evolutionists had predicted that once genes could be deciphered, there would be a clear branching pattern of evolution retracing the assumed millions of years of steady evolutionary change.  The more “diverged” the groups, the more the genetic differences would be found.  Well, that picture has not materialized.  So now, Darwinites, since you have displayed ineptitude in finding the way to the future of biology, will you get out of the driver’s seat?
Next headline on:  GeneticsDarwinism
SETI Camp Promotes Make Believe   08/17/2007    
“Every kid loves to play make believe,” wrote Lisa Grossman for Space.com’s “SETI Thursday” feature.  How did Lisa spend her summer?  Playing make believe with 16 undergraduates at a NSF- and NASA-funded SETI camp.  “For many of us, the experience was nothing short of fantasy fulfillment,” she cheerfully said in her report entitled, “How I Spent My Summer at SETI.”  The SETI Institute organized the event.
    Her report, in fact, seemed long on make-believe and short on evidence.  For Grossman, fantasizing began in third grade and carried through non-stop to SETI Camp (or, more formally, the Summer Research Experience for Undergraduates).
I imagined a universe full of tiny, hardy life.  Why not?  Microbes can live comfortably in the most absurdly unfriendly reaches of the planet.  If these little creatures can survive in volcanoes, at the bottom of the ocean, embedded in glacial ice, and even in countless human guts, then they must be able to exist on other planets!  Life must be absolutely everywhere!
    I didn’t know then that there was an entire community of scientists who felt exactly the same way.  I certainly didn’t expect that before I’d even graduated from college, I’d be working with them.
(Cf. 03/29/2007 entry.)  She mentions what some fellow campers worked on: searching for extrasolar planets, studying the geology of Europa, working on a Mars lander instrument, watching meteors, and other projects.  Nothing Grossman mentioned, though, provided any direct evidence for life beyond Earth.  What the projects did do was to harness youthful euphoria for otherwise mundane research:
Another student spent her days studying the geology of Europa, one of Jupiter’s moons.  Scientists believe that it has a vast liquid water ocean beneath a layer of ice at the surface.  She analyzed images of Europa from the Galileo mission, looking for areas of the surface whose appearance changed over time and trying to determine if those changes are what you would expect if there were a liquid ocean.  She thinks the possibilities for life on Europa are especially exciting.  ’As soon as I heard about Europa, I thought, ‘Oh, awesome.  Let’s look for lobsters!‘’ she said.  So far, she hasn’t discovered any Europan crustaceans, but she’s enjoyed learning more about geology and approaching biology and chemistry from an astronomy perspective.
Grossman discussed all the fun the others were having with their experiments – not one of which found any evidence for life out there.  Just the possibility that might play some role in the hunt was enough to make their scientific work a thrill of lifetime.  Why, it’s just like in the movies:
All of us got to take a week-long field trip to the Hat Creek Radio Observatory, home of the Allen Telescope Array, where Jill Tarter, SETI’s director of research and the inspiration for Carl Sagan’s novel Contact, explained how the telescopes work and what research they’ll be used for.  Several of us even camped overnight in tents under the array.  It wasn’t very scientifically useful, but it was definitely something to write home about.
So the hunting came up entirely empty; “Nevertheless, whether we continue on in astrobiology or not, this summer of playing alien hunters will stay with us.”  Thanks for the memories; sorry about the data.    She ended on a missionary appeal, encouraging readers to spread the word about next year’s SETI Camp.
Here’s a suggestion for them.  The name “Summer Research Experience for Undergraduates” is way dullsville and has no catchy acronym.  Nor does it convey what the SETI Camp is all about.  It fails to encapsulate the experience of being there.  They need something that connotes vivid imagery and action, where anything can become vibrant and moving and animated, where even stars, bubbles and volcanos can spring to life.  Maybe they should call it Fantasia.
    Should you awaken someone who is enjoying a fun dream?  What’s the harm of a blissful fantasy?  Even if life is never found, and if the evidence continues to go against them (read Michael Egnor’s comments and see the 07/27/2007 and 02/15/2007 entries), why spoil someone’s party? (read Larry Caldwell’s comments).  After all, lots of internet gamers and denizens of Second Life take their fantasies very seriously.  Maybe SETI Camp keeps them away from a life of idleness and crime.  Maybe something good will come from it, like chemistry did from alchemy, even if the hoped-for dream never materializes.  Their youthful zeal will advance our knowledge of extrasolar planets, the geology of planetary moons, the adaptations of extremophiles, and mineral content of meteors, with or without mythical lobsters under Europa’s ice.  And the Intelligent Design community can continue to harvest the irony of Contact (12/03/2005) whether or not the dreamers catch on.  What’s the matter, isn’t this all worth a little taxpayer money?  Still, it’s kind of sad....
Next headline on:  Origin of LifeSETIDumb Ideas
Artificial Selection Is Not Natural Selection   08/16/2007    
From Nature1 comes this point to ponder:
Evolution has crafted thousands of enzymes that are efficient catalysts for a plethora of reactions.  Human attempts at enzyme design trail far behind, but may benefit from exploiting evolutionary tactics.
The subheading summarized a commentary by Michael P. Robertson and William G. Scott (UC Santa Cruz) on “directed evolution” experiments by Burkhard Seelig and Jack Szostak, reported in the same issue of Nature.2  The commentary began:
Chemical reactions in living organisms are catalysed by enzymes, the vast majority of which are proteins.  These finely tuned catalysts are the result of billions of years of evolution, and far surpass anything yet created by humans.  Indeed, our ability to design enzymes, on the basis of our knowledge of protein structure and reaction mechanisms, can most charitably be described as primitive.
Burkhard Seelig and Jack Szostak used an iterative selection process to yield useful enzymes, but did not claim this is how nature did it.  They had a goal: “product formation as the sole selection criterion,” they said, meaning they were watching for a match to an intelligently chosen standard.  Though they called this “directed evolution” and “selection,” it was clear that the scientists were doing the directing and selecting.  Yet the commentary by Robertson and Scott said this was just like nature did it:
Although proteins have won the fitness contest of natural selection to become the pre-eminent enzymes, billions of years ago life may have started with RNA enzymes – ribozymes – in a putative RNA world that pre-dated proteins and DNA.4  The RNA bond-forming (ligation) reaction is a favourite of those studying evolution from an RNA world, because it is presumed to be the crucial chemical step of RNA self-replication.  Szostak and fellow molecular biologist David Bartel were the first to isolate a ribozyme ligase, using artificial selection.  Their technique is the prototypical method for the in vitro evolution of ribozymes, and has been adapted for protein enzymes by Seelig and Szostak in the current study.
Artificial selection toward a goal, however, is very different from natural selection as conceived by Darwin.  Natural selection has no goal, no direction, no retained knowledge, and no reward.3  Even Darwin worried about his term natural selection, because it seemed to imply an intelligent selector.  He later acquiesced to Herbert Spencer’s term, survival of the fittest, as a better encapsulation of his idea.
    The confusion between artificial selection and natural selection continued to the end of the article, where Robertson and Scott said, “Designing a selection process that includes ground-state interactions (as Seelig and Szostak’s study does) and transition-state interactions (as the previous catalytic-antibody approaches did) might yield even better-designed enzymes.”
1Michael P. Robertson and William G. Scott, “News and Views: Biochemistry: Designer Enzymes,” Nature 448, 757-758 (16 August 2007) | doi:10.1038/448757a.
2Burkhard Seelig and Jack W. Szostak, “Selection and evolution of enzymes from a partially randomized non-catalytic scaffold,” Nature 448, 828-831 (16 August 2007) | doi:10.1038/nature06032.
3Survival cannot be considered a reward in Darwinism.  Reward implies a rewarder and a goal that a contestant strives for.  In the value-neutral, materialistic world of blind natural selection, nobody could care if an organism survives or not.  For these reasons, the commentators’ characterization of a “fitness contest” won by “evolutionary tactics” is misleading.
4For problems with the RNA World scenario for the origin of life, see the 07/11/2002 and 02/15/2007 entries.
Even a middle school biology teacher or an NCSE staff member would know this is not natural selection.  How can the premiere science journal in the world allow this egregious an example of the fallacy of equivocation to make it into print?  Happens all the time, folks.  If the logical inconsistency was obvious to you, you’re wiser than eggheads at UC Santa Cruz and the editors of Nature.
Next headline on:  DarwinismDumb Ideas
Stupid Evolution Quote of the Week: Shark Chefs and Finger Food   08/15/2007    
A press release from University of Florida wins this week’s prize for trying to make dogmatism funny (or at least appealing to snackers):
When the first four-legged animals sprouted fingers and toes, they took an ancient genetic recipe and simply extended the cooking time, say University of Florida scientists writing in Wednesday’s issue of the journal PLoS ONE.
    Even sharks – which have existed for more than half a billion years – have the recipe for fingers in their genetic cookbook – not to eat them, but to grow them.
But sharks don’t have fingers, you say?  Right; they just had the recipe but never used it: “the genetic processes necessary to muster fingers and toes existed more than 500 million years ago in the common ancestor of fish with cartilaginous skeletons and bony fish – more than 135 million years before digits debuted in the earliest limbed animals,” the article says.
    And what were these finger genes doing 135 million years before they were used?  Just making fins, apparently.  “...sharks and many other types of fish do not form more dramatic appendages during this late phase of Hox gene expression because it occurs briefly and only in a narrow band of cells, compared with the more extended time frame and larger anatomical area needed to prefigure the hand and foot in limbed animals.”
    So for 135 million years, no animal ever tried the latent innovation.  But when it was time for fingers and toes to debut, their appearance was “an extremely dramatic, important point in evolution that has captured the interest of many.”  Otherwise we would be playing finball instead of handball.
    “The finding shows what was thought to be a relatively recent evolutionary innovation existed eons earlier than previously believed,” the article says.  The following paragraph makes it all so plausible:
“We’ve uncovered a surprising degree of genetic complexity in place at an early point in the evolution of appendages,” said developmental biologist Martin Cohn, an associate professor with the UF departments of zoology and anatomy and cell biology and a member of the UF Genetics Institute.  “Genetic processes were not simple in early aquatic vertebrates only to become more complex as the animals adapted to terrestrial living.  They were complex from the outset.  Some major evolutionary innovations, like digits at the end of limbs, may have been achieved by prolonging the activity of a genetic program that existed in a common ancestor of sharks and bony fishes.”
Question: What was the observation that gave rise to all this kitchen prose?  Scientists at UFL watched the pattern of expression in Hox genes in living sharks, and “discovered a phase of gene expression in sharks that was thought until recently to occur only when digits began to form in limbed animals.”  Well, then, (snap fingers): evolution is the only possible explanation.
It’s the only possible answer because it is the only answer the Darwin Party will allow in the arena, which has become a circus.  Let’s all do Steve Martin’s rendition of “When the shark bites...” while re-reading the quote at top right of this page.
Update: National Geographic was quick to join the feeding frenzy.  “The discovery pushes back the date of the evolutionary ‘fin to limb’ advance by some 135 million years,” the article said.  Which quote do you think should win?  The one above or this one by Marcus C. Davis?
Dramatically different ways of being—new forms, new functionsmay evolve through relatively minor adjustments to existing genes and gene functions,” Davis said.
    “It only requires modifications—‘tweaks’—if you will, to previously existing genetic systems,” he said.
    “A symphony can play dramatically different compositions by changing the role each musician plays, [but] only on occasion are instruments added or lost.”
And here you thought all along that symphonies were played by intelligent design.  Not this one.  It’s Darwin’s overture to his comic opera Farcical, dopus 135M, starring the fat lady who always sings last, Tinker Bell.
Next headline on:  DarwinismMarine BiologyGeneticsDumb Ideas
Largest Dinosaur Mass Grave in Switzerland Found   08/15/2007    
As many as 100 plateosaurs may be buried in a mass grave in Switzerland, reported the Reuters news service.  “The finds show that an area known for Plateosaurus finds for decades may be much larger than originally thought” – as much as a mile in width in the town of Frick, near the German border.  An amateur found bones while investigating a construction site.
    The article mentions that Germany has two other large plateosaur burial sites.  It described the animals as peaceful herbivores that lived along a river delta.  Plateosaur fossils are common in Europe.  The four-legged herbivores, classified as Triassic, grew over 30 feet in length and could weigh as much as 1500 pounds.
Must have been a bad day in dinotopia.  Anyone know of a modern example of hundreds of large animals like elephants or giraffes all being buried at the same time over many miles while grazing peacefully along a river bank?  We were once taught the present is the key to the past.  Remember the specimen found under the North Sea? (04/25/2006).
Next headline on:  DinosaursFossils
  Gophers: nature’s rototillers, from 08/02/2004.

Gratitude Protects Against Health Loss   08/15/2007    
A study in the “new science of gratitude” showed that thankfulness is good therapy.  Researchers at UC Davis and Mississippi University for Women tracked 12 female patients who kept journals of their hospital stays while receiving organ transplants.  A control group just reported “medication side-effects, how they felt about life overall, how connected they were to others and how they felt about the upcoming day.”  Another group answered the same questions but was asked to add five things they were thankful for, and why.  Guess which group fared better.
    “After 21 days, mental health and general wellbeing scores had risen for patients in the gratitude group but declined for those in the control group,” the article continued.  “Patients in the control group also reported a loss of vitality, while the grateful patients experienced no change.”

Gratitude is a healthful attitude.  It’s a Biblical attitude.  The Bible is filled with admonitions to be thankful (e.g., I Thessalonians 5, Philippians 4, Colossians 3).  Even in a hospital, there are many things to be thankful for.  The patients in this study should have been grateful that donors made their organs available for transplanting, and that medicine has advanced far enough to make transplanting a life-saving option, and that the body is filled with wondrous repair mechanisms (see next entry).  It should be easy to list dozens of blessings.  How many things can you count right now?  Don’t do it just for preventive medicine; really be thankful.  If you do it just for the health benefits, you’re not being grateful; you’re being selfish.
    Even with our modern affluence, gratitude is in short supply these days.  How many of your coworkers ever express true appreciation for the blessings they enjoy?  More often you are likely to hear the latest gripe about corporate politics, working conditions, the traffic on the commute, low wages, how hard I worked without being noticed, the slop the cafeteria is serving, or whatever.  A day living in North Korea might cure a lot of that.  Even the cheerful gossip often suggests cynicism – something stupid the boss did, an egregious mistake someone made, or the like – it’s the laughter of fools (Ecclesiastes 7:6), not the positive, uplifting joy of thankfulness.  People would look at you funny if you said, “Wow, what a beautiful day!  Is this a great country, or what?  I’m so glad to feel terrific and have this awesome job.  I can hardly wait to get to work!”  But then, guess who is likely to be in better health.
    Lack of gratitude rides on a current of pride and selfishness.  It conveys the attitude “I deserve better than this” or “the world owes me something.”  No you don’t, and no, the world doesn’t.  We’re all sinners and deserve judgment, remember?  We should be thankful for each moment of mercy.  The beginning of your list might be, “I’m very thankful for another day in which I did not get what I deserve.”
    Thanklessness and its root of pride and selfishness also underlies much of the fixation on biological evolution.    It makes God angry.  Paul wrote in Romans 1 that the wrath of God is revealed from heaven against all ungodliness and unrighteousness of men, who suppress the truth in unrighteousness, because the truth about God is self-evident within them and has been revealed to them through what has been made (created).  In spite of the evidence, they exchanged the truth of God for a lie.  And here’s the tie-in: what is producing the stream of atheistic rage against creationism (08/08/2007) spewed by the sourpuss spokespeople of the Darwin Party?  “because, although they knew God, they did not glorify Him as God, nor were thankful
    Some people need a heart transplant.  Recommended surgeon: the Great Physician.  Offices conveniently located throughout time and space.  Hours: 24 x 7.
Next headline on:  HealthBible
DNA Repair Is Highly Coordinated   08/14/2007    
The remarkable ability of cells to repair DNA damage has been the subject of several recent articles.  As a long, physical molecule subject to perturbing forces, DNA is subject to breakage on occasion.  If repair mechanisms were not in place, the genetic information would quickly become hopelessly scrambled and life would break down.  Studies are revealing that multiple levels of control are involved in maintaining genomic integrity.
  1. Repair shop:  A study reported by Lawrence Berkeley Lab indicated that double-stranded break repairs tend to take place in specialized locations like “repair shops” in the nucleus.  They have “found evidence that indeed there are specific regions where broken DNA is concentrated for repair.”
  2. Damage suppressor:  Some sites in chromosomes are more subject to breakage than others.  A report from Tufts University reported by EurekAlert said that tumors can result from stalled replication at these sites.  Fortunately, there is a “tumor suppressor gene” whose presence is important for preventing tumor formation.  Most of the time, the article says, broken strands are repaired correctly.  Cancer can begin when the repair process goes awry, deleting or rearranging segments of DNA.
  3. Speed translator:  Researchers at Einstein School of Medicine found that RNA polymerase can translate up to 70 base pairs per second – much faster than has been previously reported.  The molecular machine stalls and pauses for unknown reasons along the strand, however, making the actual throughput less.  The researchers believe that the pauses are somehow involved in gene regulation.
  4. First response firefighters:  A study from Texas A&M University reported by EurekAlert found that two independent pathways converge on repair: chromatin remodeling and DNA checkpoint and repair.  “When molecular disaster strikes, causing structural damage to DNA, players in two important pathways talk to each other to help contain the wreckage,” the article began.  “....If DNA damage is like a fire that spreads when impaired cells divide and multiply, then the DNA checkpoint and repair system can be considered a first-response firebreak,” the article stated.  This stops cell division and allows the cell time to assess the damage.  Depending on the damage report, “The ‘fire’ is either doused by DNA repair or by programmed destruction of the cell.”
        The chromatin remodeling pathway, which shuffles DNA around nucleosomes to regulate access to DNA, is also involved, the report continued.  Modification of histones by the large “ATP-dependent chromatin remodeling complexes” serves to regulate the DNA checkpoint pathway.  The article mentioned that this pathway is conserved (i.e., unevolved) in all eukaryotes, from yeast to humans.
  5. Come again?  A sample of the complexity of DNA damage response can be found in the jargon of this paper from PNAS by Laura A. Lindsey-Boltz and Aziz Sancar at University of North Carolina School of Medicine, titled “Reconstitution of a human ATR-mediated checkpoint response to damaged DNA.”  If you have trouble following this, good thing your cells understand it: “We show that the damage sensor ATR in the presence of topoisomerase II binding protein 1 (TopBP1) mediator/adaptor protein phosphorylates the Chk1 signal-transducing kinase in a reaction that is strongly dependent on the presence of DNA containing bulky base lesions.  The dependence on damaged DNA requires DNA binding by TopBP1, and, indeed, TopBP1 shows preferential binding to damaged DNA.”  And that’s just the introduction.
  6. Stall at the typo:  Lindsey-Boltz and Sancar also suggested in a Commentary in PNAS that RNA Polymerase II, the DNA translator, could be “The most specific damage recognition protein in cellular responses to DNA damage.”  It acts like the “the universal high-specificity damage sensor for three major cellular responses to bulky DNA lesions,” they said.  When UV light has introduced an error, RNAP II stops and calls for help.  “The resulting structure recruits proteins that initiate repair, cell cycle checkpoints, or apoptosis [programmed cell death].”  Maybe this is what is going on when the translation process stalls: the word processing machine won’t proceed till the typo is fixed.
  7. Repair champ:  Raquel Sussman reported in PNAS on a model animal that is “endowed with special qualities for detecting external as well as internal abnormalities” and can “repair chromosomal lesions to a much greater extent than the human population.”  The animal is the zebrafish.  As an easy-to-study organism in the lab, it promises to help scientists gain insight into the causes of cancer and DNA damage, which can include ultraviolet rays and chemicals in the water.
The insights into DNA damage repair are part of a growing respect for the complexity of the cell.  A press release from U of Toronto reported by EurekAlert underscored this trend with its title, “Unravelling new complexity in the genome.”  It’s not just the number of protein-coding genes that are significant any more.  How the genes are switched on and off and regulated is becoming the focus of research.  Scientists used to view DNA as the master source of genetic information, but something is controlling DNA at higher levels.  “One outcome of these new studies is that the alternative splicing process appears to provide a largely separate layer of gene regulation that works in parallel with other important steps in gene regulation,” the article said.  The “regulatory code” now appears to be another level of genetic information above the genetic code.  It might be even more important than the information in the genes themselves.  Benjamin Blencowe (U of Toronto) remarked, “The number of genes and coordinated regulatory events involved in specifying cell and tissue type characteristics appear to be considerably more extensive than appreciated in previous studies.”
Isn’t the cell wonderful?  We each have trillions of them, but each one deserves our love and respect.  None of these articles, as usual, tried to explain how blind evolution could have produced all this coded information with its self-healing mechanisms.  Instead of Darwinizing it, maybe we should Pasteurize it: use the research to cure disease and improve the human condition, and to stand in awe of God.  Like Louis Pasteur said, “The more I study nature, the more I stand amazed at the work of the Creator.”
Next headline on:  GeneticsCell BiologyAmazing Facts
Science Confronts Philosophy, or Vice Versa   08/13/2007    
Practicing scientists often disdain philosophy.  To them, it seems like mumbo-jumbo with convoluted arguments telling them why they don’t exist or why two-ness cannot be represented on a chalkboard.  To a scientist dealing with real lab rats or chemicals off the shelf, such ramblings seem detached and worthless.  Who would know more what science is than a scientist?  Philosophizing about science seems far less productive than just doing science.  One described philosophy as “incomprehensible answers to insoluble problems.”
    Philosophy’s domain is all-encompassing.  It attempts to address, in a systematic and rigorous manner, questions about what exists (ontology), how we know things (epistemology), and how we should live our lives (moral and political philosophy).  Philosophers ask the pointed questions that give precision to our thoughts.  A fairly new branch of philosophy is the philosophy of science.  The question “what is science?” is not and cannot be a scientific question.  It is a statement of philosophy about science, describing the limits of its epistemology and the nature of its ontology.
    On the rare occasions when the scientific journals discuss philosophy of science, they usually delve into it only long enough to come back to a reassuring verdict that objectivism is still the only philosophy worth believing (i.e., that our sensations of the world correspond to what is objectively real).  Here were some examples in the form of book reviews in Science magazine.
  1. Perspectives on perspectivism:  Perspectivism (a form of constructivism, i.e., that our view of reality is a construct of our sensations) claims that the human mind cannot extricate itself from an observation in a bias-free manner: what we call a quark, for instance, or what we perceive as red, is a function of how we, as humans, classify and perceive things.  Peter Lipton reviewed a recent book by Ronald Giere on this view, Scientific Perspectivism, in Science May 11.1  Lipton reviewed the theories of Immanuel Kant and Thomas Kuhn (“Kant on wheels”), and discussed Giere’s own position.  Giere extended his discussion of color perception to all of science, concluding that “science is perspectival through and through.”
    Constructivists deny the “view from nowhere.”  Science can only describe the world from a human perspective.  Objectivists claim that, on the contrary, there is such a view.  You can’t think without thinking, but it does not follow that what you are thinking about--baryons, say--must somehow include the thinker.  Objectivists hold on to the idea that the world has its own structure, which science reveals.
    Lipton ended up disagreeing with Giere, but provided only fuzzy responses: he said the constructivist position “remains obscure” and “difficult to grasp.”  He said objectivists will “not be moved” by the book, because it has an “uncertain force.”  Here was his summary case for objectivism:
    Scientific descriptions surely are incomplete and affected by interest, but these are features the objectivist can take on board.  Completeness and objectivity are orthogonal.  Maybe in the end constructivism is true, or as true as a constructivist can consistently allow.  Nevertheless, the thought that the world has determinate objective structures is almost irresistible, and Giere has not ruled out the optimistic view that science is telling us something about them.
    It is not clear, however, that Giere or other constructivists would be put off by these arguments.  There is no necessary connection between an argument being pleasing and it being true.  Are not descriptions like “irresistible” and “optimistic” some of the very human perspectives Giere was talking about?

  2. Who watches the watcher?  Chris Adami, usually known for his evolutionary computing work, reviewed an unusual book by Douglas Hofstadter, I Am a Strange Loop, in Science May 25.2  Hofstadter tried to give a completely materialist explanation of mind:
    Hofstadter’s explanation of human consciousness is disarmingly simple.  Even though he spends most of the book giving examples and analogies from realms as disparate as particle physics and boxes of envelopes, the main idea is simply that our feeling of a conscious “I” is but an illusion created by our neuronal circuitry: an illusion that is only apparent at the level of symbols and thoughts, in much the same way as the concepts of pressure and temperature are only apparent at the level of 1023 molecules but not the level of single molecules.  In other words, Hofstadter denies consciousness an element of ontological reality, without denying that our thoughts and feelings, pains and longings have an “inner reality” when we have them.  But to show that consciousness is a collective phenomenon of sorts, he needs to delve deep into the theory of computation and, in particular, Austrian mathematician Kurt Gödel’s proof of his incompleteness theorem, as these concepts are key to the idea the author wants to convey.  And he does this admirably in a mostly playful manner, choosing carefully constructed analogies more often than mathematical descriptions.
    Again, however, it is not at all certain a philosopher of another persuasion would be tongue-tied over these arguments.  Playful arguments have no necessary connection with truth.  As skilled and admirable as Hofstadter’s writing might be, he has a fundamental problem explaining consciousness from particulars of neurons.  To do it, he tried to extend Gödel’s incompleteness realms upward into unknown territory where each higher realm provides the completion of each lower realm, then wraps in on itself: “Hofstadter suggests, our ability to construct symbols and statements that are about these symbols and statements creates the ‘strange’ reflexive loop of the book’s title out of which our sensation of ‘I’ emerges.
        At this point, Adami (though admiring the book) comes close to bringing the case down with a pointed question:
    This ambitious program aimed at a deconstruction of our consciousness is not without peril.  For example, if we posit that our consciousness is an illusion created by our thoughts “watching ourselves think” [as the philosopher of mind Daniel Dennett had previously suggested], we might ask “Who watches the watcher?”  Or, if I am hallucinating an “I,” who is hallucinating it?  However, an infinite regress is avoided because on the level of the neuronal circuitry, the impression of having a mind is just another pattern of firings--something consciousness researcher and neuroscientist Christof Koch of the California Institute of Technology calls “the neuronal correlate” of consciousness.
    Yet is this answer not begging the question?  The issue is whether a mind can be reduced to neurons, yet Adami just stated as a matter of fact that “the impression of having a mind is just another pattern of firings” without arguing for how or why this could be so.
        Adami clearly enjoyed the book as a companion to Koch’s The Quest for Consciousness.  He accepted the premise that mind can be expressed as an artifact of neuron firing patterns.  One consequence is that humans should be able to build conscious robots some day.  A second consequence is almost purely metaphysical:
    Second, the Gödelian construction suggests a tantalizing hypothesis, namely that a level of consciousness could exist far beyond human consciousness, on a level once removed from our level of symbols and ideas (which themselves are once removed from the level of neuronal firing patterns).  Indeed, Gödel’s construction guarantees that, while statements on the higher level can be patently true but not provable on the lower level, an extension exists that makes the system complete on that higher level.  However, new unprovable statements emerge on the next higher level--that is, on a level that maps an improbable jumble of our thoughts and ideas to, well, something utterly incomprehensible to us, who are stuck at our pedestrian echelon.  How incomprehensible?  At least as inscrutable as the love for Bartok’s second violin concerto is to a single neuron firing away.
    Thus Adami ends on an irrational leap.  Appeals to higher levels of consciousness that are unknowable from our level, even in principle, beleaguer any attempts to encapsulate mind within a materialist world view.  (And, as a materialist himself, Adami clearly did not intend to suggest that the highest level includes God.)  Claiming such ideas are incomprehensible or inscrutable is no escape if Adami wants to play the philosophy game.  An interlocutor would call it another case of Adami begging his own question: who watches the watcher?

1Peter Lipton, “Philosophy of Science: The World of Science,” Science, 11 May 2007: Vol. 316. no. 5826, p. 834, DOI: 10.1126/science.1141366.
2Christoph Adami, “Philosophy of Mind: Who Watches the Watcher?”, Science, 25 May 2007: Vol. 316. no. 5828, pp. 1125-1126, DOI: 10.1126/science.1141809.
These book reviews have been in the queue for three months but finally needed airing, because they are important.  Scientists cannot escape philosophy.  They are embedded within it, whether they like it or not.  To pretend philosophy has no bearing on their work is itself a philosophy.  The question is not whether a scientist practices philosophy, but how well he or she does it.  These two did not do it very well.  Both appealed to emotion and flights of fancy to defend objectivism and materialism.
    Christians are objectivists, but are the only ones who have a warrant for it.  Christian objectivism is founded in the eternal, unchangeable Creator.  That “anchor on the infinite” is what gives us confidence in objective reality.  A materialist cannot anchor his thoughts on anything universal, necessary, or certain; he is trapped in his cage of limited perceptions.  He cannot prove that his sensations and perceptions pertain to anything that is “out there” in the world (the correspondence theory of truth).  The Christian has an infinite-personal God that gives us the completeness to our human incompleteness.
    The case is stronger than this.  Philosopher of science Greg Bahnsen forcefully argued that only the Christian world view provides the “preconditions of intelligibility” for any rational response to existence, epistemology and morality (see American Vision for lecture series).  A skeptic might accuse Christians of having a world view based on faith (fideism).  Bahnsen’s comeback is that without the Christian world view, you cannot prove anything.  The world makes sense from a Christian view; it makes no sense from any other view.  Christians accept that they start with a world view and its presuppositions, just like everyone begins with presuppositions.  But if you want to argue anything rationally, you must start with Christian presuppositions, or your answers become arbitrary or inconsistent, or both – and once you permit arbitrariness or inconsistency, you cannot prove anything.  This, Bahnsen explains, is the transcendental proof of God’s existence.  It’s not a slippery proof based on reason (like Descartes), or on empiricism (like Paley), or on pragmatism (like one’s personal testimony), or on any of the other approaches that usually result in a stand-off.  It is a proof based on the preconditions of intelligibility: without the Christian world view, you cannot prove anything.  All rational discussion ends before it begins unless you accept as a precondition that the infinite-personal God of the Bible exists.  Then, and only then, observations and arguments make sense   A corollary is that the only way that secularists like Lipton and Adami can make their arguments is by pilfering the presuppositions of Christians.  In a vivid metaphor, Bahnsen says that the only way the bad boy can slap his father’s face is by sitting in his lap.
    The Christian world view is also the precondition for intelligibility in science.  Both Greg Bahnsen and J. P. Moreland (see his book Christianity and the Nature of Science) have argued this case cogently that one must accept Christian presuppositions before one can even do science.  To do science, you must defend the correspondence theory of truth, be able to account for a world of natural law, defend the validity of inductive inference and deductive proof, accept the reality of the mind, believe in the universal applicability of the laws of logic, and uphold universal standards of morality.  All these functions come included in the Christian world view package.  They are indefensible in any other world view.
    Christianity, then, is a precondition for the intelligibility of science and for reason itself.  This does not mean that non-Christians cannot do science or use reason, because clearly they do; it means that they cannot account for the validity of science from within their own world view.  Whether they are aware of it or not, they plagiarize Christian assumptions whenever they reason inductively or deductively about the world.  (This, Christians know, is because they retain the image of God impressed on their souls.)
    The argument that a materialist, as a collection of particles and forces, can do science without God has no more power than plugging an extension cord into itself.  (That, indeed, would be a strange loop.)  For the power to flow, science has to be plugged into a socket named Christian Presuppositions.  We have minds that can reason about objective reality because we have an all-knowing, rational, all-wise God who imbued some of that rationality into us.  He is the completion to our incompleteness.  He is the one who watches the watcher.
Next headline on:  Theology and Philosophy
  Oil made from marble, from 08/13/2002.

Immune System Appeared Early   08/12/2007    
“Social amebas” or slime molds have gotten praise recently as inventors of the immune system.  These amebas can band together in a “slug” that can move as a unit and generate stalks and spores.  Science Daily reported on research at Baylor College of Medicine that found “sentinel cells” in a colony of amebas that patrol the slug and engulf invading bacteria or toxins.  “Finding an immune system in the social amoeba (Dictyostelium discoideum) is not only surprising but it also may prove a clue as to what is necessary for an organism to become multicellular,” the lead researcher, Dr. Adam Kuspa, said.
    A Darwinian explanation was not long in coming.  The article continued,

One way to estimate the characteristics of the organism that went before those that were multicellular is to look for characteristics that are present in two, three or all four of these main groups, he said.
    “Those were likely present in the progenitor organism,” said Kuspa.  Because three of the four major groups of organisms have this pathway, “I argue that means that the progenitor of all multicellular organisms had this pathway.  Since that organism was not likely multicellular, it must have used it as some kind of signaling to respond to bacteria in the environment.”
    Looking at it from another point of view, “it’s possible that one of the properties of those (crown) organisms that allowed them to become multicellular was the ability to distinguish self from non-self -- the hallmark of an immune system,” said Kuspa.  “The speculation is that a requirement of multicellularity is that you develop systems to recognize pathogens and other non-self cells from yourself.”
Kuspa did not describe how this might have come about by a blind process of random mutation and natural selection.  Astrobiology Magazine picked up on this story, adding this comment to its article, “We Are one” –
The evolution of multicellular organisms on Earth was an important step in the diversification of life on our planet.  Understanding these important moments in the history of life can help elucidate the mechanisms through which life develops and evolves, which in turn can help astrobiologists determine the potential for life’s development on distant worlds.
The original work was published in Science.1,2  Kuspa and his team only speculated about the evolutionary significance of their description of sentinel cells.  They said that this “first glimpse” of an immune-related signaling system might represent an “ancient function” in the common ancestor of plants and animals, but they did not explain how it arose; in fact, their discovery represents “another layer of complexity to the cellular cooperation observed in the social amoeba.”  They ended with more speculation about this as a function present in the hypothetical common ancestor: “If true, it would suggest that this system of pathogen recognition was advantageous to organisms before the evolution of multicellularity.”  Mitch Leslie said amen in his commentary: “the results suggest an early beginning for the specialized immune system now seen in multicellular organisms.”
    By contrast, another paper on the immune system in Science the prior week said nothing about evolution.3  Ira Mellman wrote that “immune cells often exhibit remarkable degrees of specialization and adaptation.”  The system “comprises a variety of cell types whose activities must be carefully regulated to act as a coherent unit for the purpose of host defense.”  Because of the “emerging complexity” of the field, he encouraged cell biologists and immunologists to get their heads together to try to understand how immunity works.
1Chen, Zhuchenko and Kuspa, “Immune-like Phagocyte Activity in the Social Amoeba,” Science, 3 August 2007: Vol. 317. no. 5838, pp. 678-681, DOI: 10.1126/science.1143991.
2Mitch Leslie, “A Slimy Start for Immunity?”, Science, 3 August 2007: Vol. 317. no. 5838, p. 584, DOI: 10.1126/science.317.5838.584.
3Ira Mellman, “Private Lives: Reflections and Challenges in Understanding the Cell Biology of the Immune System,” Science, 3 August 2007: Vol. 317. no. 5838, pp. 625-627, DOI: 10.1126/science.1142955.
As usual in evolutionary fables, the observation-to-assumption ratio is so low, the paper is indistinguishable from fiction.  They assume the millions of years, they assume a hypothetical progenitor, they assume neo-Darwinian mechanisms can invent an immune system, and they assume it can evolve into the highly-functional immune systems of higher animals and plants.  What’s the only observation?  that an organism observed today (not millions of years ago) has a clever way for ridding itself of harmful bacteria and toxins.  Those not infected by Darwin narcosis might think this to be evidence of design.
    “Don’t assume” is a security principle in almost every facet of life except evolutionary biology.  Don’t assume the power switch is off.  Don’t assume the gun is empty.  Don’t assume the items on the flight checklist have been checked.  Don’t assume Dad knows he’s supposed to pick up the kids.  Don’t assume the rock on the cliff will support your weight.
    Numerous Darwin Awards have been won by victims who assumed things.  The Darwinists who write in science journals, though, get away with their rampant assumptions because they never have to face the consequences.  We think it’s time for them to learn a little responsibility, or else kindly help humanity by removing themselves from the gene pool.
Next headline on:  Cell BiologyDarwinian Evolution
“We have no idea why these galaxies grew so large so soon”   08/11/2007    
Five full-sized galaxies have been detected at the edge of the visible universe, reported Science Now.  This continues a trend over the last few years where astronomers have been detecting old objects at young ages (e.g., 07/25/2007, 09/24/2006, 08/18/2006, 03/31/2006).   “The galaxies, which are forming stars very rapidly, are big for their age, meaning that astronomers might have to rethink current ideas about galaxy formation.”
    Rethinking looms big as a theme in the article.  The first stars were supposed to coalesce slowly into the first galaxies, but “this process was supposed to take billions of years.”  A team using data from Hubble, Spitzer and Keck telescopes confirmed these are Milky Way sized galaxies, not small members of a cluster.  “We have no idea why these galaxies grew so large so soon,” remarked Giovanni Fazio of the Harvard-Smithsonian Center for Astrophysics.  “I think we still have a lot new to learn about what’s happening in the early universe,”
This is not a surprise to creationists.  It is a surprise to big-bang secular cosmologists.  We hope the astronomers will rethink current ideas, but for significant progress, they will have to think outside the bang.
Next headline on:  AstronomyCosmologyDating Methods
Weird-Science Origin-of-Life Theories   08/10/2007    
Two news articles on the origin of life seem bizarre at best.  One even used the word “bizarrely” in its own self-evaluation.
  1. Living dust:  Zap the dust in your living room and it may come alive.  Is that the gist of this story in PhysOrg?  A team of international scientists thinks that cosmic dust in plasma takes on properties similar to that of carbon-based life, like DNA.  Here’s the word bizarrely—
    Quite bizarrely, not only do these helical strands interact in a counterintuitive way in which like can attract like, but they also undergo changes that are normally associated with biological molecules, such as DNA and proteins, say the researchers.  They can, for instance, divide, or bifurcate, to form two copies of the original structure.  These new structures can also interact to induce changes in their neighbours and they can even evolve into yet more structures as less stable ones break down, leaving behind only the fittest structures in the plasma.
        So, could helical clusters formed from interstellar dust be somehow alive?  “These complex, self-organized plasma structures exhibit all the necessary properties to qualify them as candidates for inorganic living matter,” says Tsytovich, “they are autonomous, they reproduce and they evolve”.
    It should be noted that these behaviors were noted in computer models, not in real plasmas.

  2. We could be Martians:  The same scientists who revived bacteria from alleged 8 million year old ice (see 08/04/2007) say their study helps refute panspermia.  Life could not have come on comets, says a reporter on NorthJersey.com, because radiation would have killed it.  But since it might survive inside meteorites, it was OK for him to trade one weird-science theory for his own.  Because life was so hardy on Earth, and since Mars is just one step away, isn’t it logical?  Staff writer Bob Groves ended on that note: “Microbes might survive a trip from Mars if encased in a meteorite, [Paul] Falkowski of Rutgers said.  ‘So we could all be Martian